Molecular and Cellular Pharmacology Student Seminars 2004-2005

Aude S. Ada-Nguema
Keely Lab
Monday, September 13, 2004
12:00 Noon
140 Bardeen

The Small GTPase R-Ras Increases Cell spreading by Activating Phospholipase C and Modulating Intracellular Calcium and the Actin Cytoskeleton

Aude S. Ada Nguema and Patricia J. Keely
Molecular and Cellular Pharmcaology Program and the Department of Pharmacology
University of Wisconsin-Madison, Madison, Wisconsin 53706

R-ras, an atypical member of the Ras subfamily of small GTPases, has been shown to strengthen integrin-mediated adhesion through an unknown mechanism. Our primary research goal is to decipher the signal transduction pathways that connect R-ras activation to integrins. Using total internal fluorescence (TIRF) microscopy of dye loaded MCF10A cells stably transfected with a constitutively active R-ras (R-Ras38V) isoform or a control vector, we found that the cell edge dynamics of the control and R-ras cells were distinct. Control cells spread by alternating membrane extension and retraction events from the beginning of cell spreading, reaching a maximum spreading area of 400 _m2 within 30 minutes. However R-ras38V cells continuously extend their membrane with few retraction events, leading to a maximum spread area of 800-1500 _m2. Besides spreading faster, R-ras cells also had an extended spreading time. The difference in the mechanism of cell spreading between these two cells types strongly correlated with the type of actin-mediated membrane protrusions that drove cell spreading. Control cells spread using filopodia whereas R-ras cells spread using lamellipodia as shown by TIRF and actin cytoskeleton staining. The mechanism of R-ras spreading was switched to be like control cells by serum-starving the cells overnight prior to analysis, indicating that R-ras signaling alone is not sufficient to mediate the changes in cell spreading. Furthermore inhibiting PLC or chelating internal calcium also switched the mechanism by which R-ras cells spread, and reduced the formation of subsequent focal adhesions. A role for PLC downstream of R-ras signaling was further supported by the finding that R-ras directly interact with one of the PLC isoforms, PLC-_. Overall, our data suggest that R-ras enhances integrin function by maximizing the areas of contact between the cell and the ECM through the activation of PLC, the mobilization of internal calcium stores and the regulation of the actin cytoskeleton.

Xiao-Fan Wang, PhD
Professor, Department of Pharmacology and Cancer Biology, Duke University Medical Center
Tuesday, September 14, 2004
12:00 Noon
Biotechnology Center Auditorium
425 Henry Mall

Novel Players in Tumor Metastasis

For additional information, please contact Student Host Sujatha Venkataraman, svenkatarama@wisc.edu. Note to Graduate Students: There will be a Graduate Student Lunch with Dr. Wang following his seminar in the Pharmacology Conference Room, 3765 MSC.

Beth Chang
Miyamoto Lab
Monday, September 20, 2004
12:00 Noon
140 Bardeen

NF-kB Super-Induction: An NF-kB Memory Pathway Mediated via the Exchange of NF-kB Dimer Subunits

The NF-kB family of transcription factors regulates various physiological and developmental processes. The transcriptional activity of NF-kB can self-regulate via controlling the expression of its family members. With the exception of p65, all of the NF-kB family members (c-Rel, RelB, p52 and p50) contain at least one NF-kB binding site (kB site) within their promoter regions. Thus, previous activation of NF-kB could lead to changes in the levels of different NF-kB protein expression and associated changes in biological readouts. We have identified a phenomenon termed "NF-kB super-induction" where an initial NF-kB activating event results in increased NF-kB DNA binding activity to selective kB sites when a second stimulus is applied. My studies to determine the mechanism of super-induction indicate that super-induction occurs through an NF-kB and Elf-1 dependent transcription of p50. The increased levels of p50 in turn exchange the pre-existing NF kB dimers into p50-containing dimers. A second NF-kB stimulus applied at this point activates these p50-containing dimers. Moreover, in the context of certain leukemia cell lines exposed to anti cancer agents, p50 containing dimers caused heightened expression of certain NF-kB regulated genes, such as cell cycle regulators (e.g. p21) resulting in super-survival of these malignant cells. My studies thus suggest that the super-induction phenomenon represents an NF-kB memory pathway in which an initial NF-kB activating event results in augmented response to second NF-kB stimuli in a gene-selective fashion through the increased expression of the p50 NF-kB subunit. These findings further suggest that auto-regulatory induction of specific NF-kB subunits provides a mechanism for diversification and/or amplification of NF-kB regulated biological responses.

Ashley Doan
Huttenlocher Lab
Monday, October 4, 2004
12:00 Noon
140 Bardeen

Characterization of RACK1, a Regulator of Cell Adhesion and Migration

RACK1 is an adaptor protein that binds to and regulates signaling via Src and PKC-dependent pathways. Elevated levels of rack1 mRNA has been demonstrated in non-small cell lung, colon, and breast carcinoma cells compared to normal tissue. Thus identification of the function of RACK1 and its regulation in normal and tumor cells appears to be essential to evaluate oncogenic or tumor-suppressor potential. I have evaluated the roles of paxillin as a potential downstream effector of RACK1 in the regulation of adhesions and cell migration. Subsequently, I would also like to elucidate the role of RACK1 in modulating cell-cell contact and metastasis in breast epithelial cells. Our previous studies demonstrated that RACK1 modulates cell migration and adhesion complex organization through its interaction with Src. We now show that down-regulation of RACK1 using siRNA increases the random and haptotactic migration of fibroblast cell lines, suggesting that endogenous RACK1 acts as a negative regulator of cell migration. We have evidence to suggest that paxillin is an important target downstream of RACK1 that regulates adhesion complex dynamics and cell migration. Together, our findings suggest that RACK1 may be playing a role in adhesion complex dynamics and cell migration by modulating Src-mediated phosphorylation of the focal adhesion protein, paxillin.

Jaehyung (Gus) Cho
Mosher Lab
Monday, October 18, 2004
12:00 Noon
140 Bardeen

Deposition of Fibronectin and Its N-terminal 70-kD Fragment on Platelets Spread on Fibrin Matrices: Chracteristics, Controlling Molecules, and Its Receptor

Fibronectin (FN) is a dimerized glycoprotein of 230-250-kD subunits that is present in a soluble form in plasma and other body fluids and in an insoluble form in tissues. FN in tissues mediates integrin-supported cell adhesion and migration and has been implicated in a variety of cellular processes that underlie embryogenesis, wound healing, oncogenic transformation, and inflammation. A role of FN for platelet function, however, remains to be determined. Recently, in vivo studies of mice lacking plasma FN or fibrinogen suggested that pFN plays a role in the formation of stable thrombi. We investigated the effect of fibrin matrices on platelets adhesion and spreading and on platelet-mediated FN assembly. Antibody-blocking studies indicated that static adhesion of platelets to fibrinogen or fibrin matrix is via avb3 and aIIbb3 integrins and to FN or FN-fibrin matrix (fibrin containing covalently crosslinked FN) is via avb3 and a5b1 integrins. More platelets adhered to FN-fibrin matrix than to fibrin matrix. Fluorescein isothiocyanate-labeled FN (FITC-FN) was deposited into fibrillar arrays by platelets spread on FN or fibrin matrices but not by platelets spread on fibrinogen. Scatchard analysis indicated that 4,500-7,000 FN molecules bound per spread platelet over 1 hr with a Kd of 4-5 nM. FITC-labeled N-terminal 70-kD fragment of FN bound to spread platelets in a pattern similar to FN deposition. Linear arrays of 70K fragment but not FN assembly was extracted by deoxycholate. However, in the presence of a cross-linker, arrays of 70K resisted detergent extraction, indicating that 70K fragment was crosslinked to binding molecules. Platelet morphology and FITC-FN deposition were disturbed by treatment of platelets with cytochalasin B or anti-avb3. Tyrosine phosphorylation of intracellular proteins, including focal adhesion kinase, was enhanced in platelets spread on FN or fibrin matrices as compared to platelets spread on fibrinogen. These results indicate that FN assembly by spread platelets is regulated by integrin interaction with components of provisional matrices, remodelling of actin cytoskeleton and signaling events. FN assembly by platelets interacting with fibrin matrices likely stabilizes platelet plugs at sites of injury.

Hogune Im
Bresnick Lab
Monday, October 25, 2004
12:00 Noon
140 Bardeen

Dissecting the Activation of Gata-1-Dependent Endogenous Murine b-Globin Locus


Defining factors and signals that establish and maintain the native nucleoprotein structure of endogenous chromatin domains represents a powerful approach for elucidating transcriptional mechanisms.  In adult erythroid cells, the locus control region (LCR) and the adult b-globin genes of the murine b-globin locus are highly enriched in acetylated histones H3 and H4 and H3 methylated at lysine 4 (H3-meK4).  By contrast, the embryonic b-globin genes reside in a broad region of reduced acetylation.  Histone H3 methylated at lysine 79 (H3-meK79) is highly enriched at the adult b-globin genes, but not at the LCR.  To identify molecular steps in b-globin transcriptional activation, genetic complementation experiments were conducted in GATA-1-null, G1E cells containing an estrogen receptor hormone binding domain-GATA-1 fusion protein (ER-GATA-1).   Kinetic analysis of ER-GATA-1 occupancy of chromatin and establishment of the histone modification pattern by chromatin immunoprecipitation (ChIP) revealed that GATA-1 occupies multiple regions within the LCR prior to the bmajor promoter.  Chromatin accessibility at the promoter was low until ER-GATA-1 assembled into regulatory complexes at the LCR.  Subsequently, ER-GATA-1 accessed the bmajor promoter, induced histone H3 acetylation, RNA polymerase II recruitment, and elevated H3-meK79 levels.  Blocking transcriptional elongation did not erase H3-meK79, indicating that maintenance of H3-meK79 does not require ongoing elongation.  Analysis of N-terminal GATA-1 deletion mutants resembling truncated GATA-1 polypeptides expressed in megakaryoblastic leukemia, which retain Friend of GATA-1 (FOG-1) binding and DNA binding activities, revealed that FOG-1 binding and DNA binding activities are defective in polymerase recruitment. These results support a model in which acquisition of transcriptional competence requires establishment of H3-meK4, which is GATA-1-independent.  ER-GATA-1 binding to the LCR increases histone H3 acetylation at the promoter as an early event in transcriptional activation, which is tightly coupled to increased promoter accessibility and polymerase recruitment. Increased promoter accessibility permits ER-GATA-1 access to the promoter, which precedes maximal induction of H3-meK79, a late event in activation.  Given the dynamic regulation of H3-meK79 by GATA-1 and NF-E2 and the modulation of H3-meK79 levels during erythropoiesis, we propose that H3-meK79 is a crucial signal that controls the rate of b-globin transcription. Studies are underway to dissect mechanisms underlying the requirement of N-terminal sequences of GATA-1 for chromatin modification.  As the N-termini of GATA factors differ considerably, one might expect these divergent sequences to establish GATA factor-specific functions.

Katarzyna Modzelewska
Keely Lab
Week of November 1, 2004

Ack-1 regulates Cdc42 induces integrin-mediated cell migration through a signaling complex with p130Cas, FAK and Src

Activation of Cdc42, a member of the Rho family of small GTPases, promotes integrin-mediated migration and invasion of breast epithelial cells across collagen matrices (Keely et al, 1997. Nature 390: 632). To elucidate the molecular basis for the effects of Cdc42, we tested whether Cdc42 regulates integrin signaling pathways that lead to cell migration.  We found that Cdc42 is a necessary component of the a2b1 integrin signaling pathway leading to p130Cas phosphorylation, since activated Cdcd42(61L) lead to enhanced and dominant negative Cdc42 (17N) blocked p130Cas phosphorylation.  Additionally, Cdc42 activation occurred downstream of the a2b1 integrin, indicating it is a direct component of this signaling pathway.  Signaling from Cdc42 to p130Cas and FAK was functionally relevant, since the SH3 domain of p130Cas and FRNK, which function as a dominant negatives of the corresponding molecules, blocked Cdc42-induced cell migration.  In addition, both FAK and p130Cas can be immunoprecipitated with Cdc42 in a collagen dependent manner.  Moreover, we find a role for the Cdc42 effector, the tyrosine kinase Ack-1.  Ack-1 interacts with the beta1 integrin and becomes tyrosine phosphorylated following collagen stimulation. This phosphorylation is dependent on both Src and FAK kinases. Overexpression of either wild-type or kinase dead Ack-1 constructs enhanced Cdc42-induced migration, suggesting a role for Ack-1 in regulating cell migration.  Both wild type and kinase dead Ack-1 enhanced p130Cas phosphorylation, with wild type being more potent. Finally, we find evidence for a signaling complex between Ack-1, p130Cas, FAK and Cdc42.  Importantly, the formation of this complex was collagen-dependent, even in Cdc42(12V)-expressing cells.  Our results suggest a signaling pathway downstream of the a2b1 integrin by which collagen stimulates the activation of Cdc42, the phosphorylation of Ack-1, and their association with p130Cas and FAK.  These signaling events ultimately lead to cell migration.

Misuk Kang
Walker Lab
Department of Physiology and Molecular and Cellular Pharmacology Training Program
Monday, November 8, 2004
12:00 Noon
140 Bardeen

Correlation of cardiac contractile function with translocation of novel PKC isoforms in adult ventricular myocytes

In order to examine cardiac contractile regulation and protein kinase C (PKC) translocation in parallel, the d- and e-isoforms of PKC were fused to green fluorescent protein (GFP) and expressed in adult rat ventricular myocytes maintained in short term culture.  PKC-d-GFP and PKC-e-GFP were predominantly cytosolic until phorbol dibutyrate (PDBu) was introduced.  PKC-e-GFP redistributed preferentially to the surface sarcolemma, whereas PKC-d-GFP redistributed preferentially to perinuclear structures that co-localized with a Golgi marker.  Similar translocation preferences were observed in human embryonic kidney (HEK 293) cells, a non-cardiac cell type with a distinct morphology.  Myocyte contractile function was assessed by monitoring twitch shortening with field stimulation at 0.5 Hz, 22oC.  In PKC-e-GFP expressing myocytes, PDBu caused a 40% decrease in twitch amplitude that paralleled accumulation at the surface sarcolemma, but this response did not differ from myocytes expressing GFP alone.  In PKC-d-GFP myocytes, PDBu caused a transient negative inotropic response followed by a robust, sustained and bis-indoylmaleimide (BIM)-sensitive positive inotropic response that paralleled perinuclear PKC-d accumulation.  PKC-e-GFP myocytes at higher expression levels responded more like PKC-d-GFP myocytes including perinuclear accumulation and a sustained and BIM-sensitive positive inotropic response.  Conversely, PKC-d-GFP myocytes behaved more like PKC-e-GFP myocytes when stimulated with phorbol 12-myristate-13-acetate (PMA, a more hydrophobic phorbol ester) including PKC-d-GFP accumulation at the surface sarcolemma and an attenuated positive inotropic response.  The data suggest that these novel PKC isoforms have little effect on contractile function when accumulating at the cell surface, but produce strong positive inotropic responses upon accumulation at intracellular sites.

Paul Nuzzi
Huttenlocher Lab
Monday, November 15, 2004
12:00 Noon
140 Bardeen

The Role of Calpain-II in Neutrophil Polarization and Chemotaxis

Neutrophil migration and chemotaxis are critical steps involved in innate immunity and the development of inflammation. The ability of neutrophils to migrate within a shallow gradient of chemoattractant requires a dynamic system with tight regulation and specific localization of intracellular proteins. In our previous work we demonstrated that calpain inhibition induced neutrophil adhesion, polarization and rapid chemokinesis in the absence of exogenous activators, while disrupting neutrophil chemotaxis and directional persistence in a gradient of IL-8 and fMLP. In this study we further characterize the role of calpain in regulating neutrophil migration and examined isoform specificity. Using RT-PCR and Western blot analysis we show that neutrophils express both calpain-1 and calpain-2 isoforms with calpain-1 as the more abundant isoform. Upon IL-8 or fMLP stimulation, immunofluorescence microscopy shows an asymmetric redistribution of the two isoforms with calpain-2 localization at the leading edge and calpain-1 localized to the rear. Biochemical analysis indicates that upon activation each isoform also partitions into distinct cellular fractions, with calpain-2 localized to lipid rafts. To examine the importance of this asymmetry, HL-60 cell lines over- expressing wt and proteolytically dead calpain-2 were examined for effects on polarization and chemotaxis. Over-expression of calpain-2 resulted in an increase in chemotactic response over control, while over-expression of the proteolytically dead calpain-2 abrogated chemotaxis. This suggests that the two ubiquitous isoforms of calpain, calpain-1 and 2, have distinct distribution and functions during neutrophil motility and suggests an essential role for calpain-2 in neutrophil chemotaxis.

Haichuan Duan
Jefcoate Lab
Monday, December 13, 2004
12:00 Noon
140 Bardeen

Post-transcriptional Regulation of the Steroidogenic Acute Regulatory Protein (StAR) mRNA

The steroidogenic acute regulatory protein (StAR) mediates cholesterol import from outer to inner mitochondrial membrane, a rate-limiting step for steroid hormone biosynthesis. Two major polyadenylation sites give rise to two StAR mRNA forms (1.6kb and 3.5kb) differing only within their 3' untranslated regions (3'UTR). AU-rich Elements (AURE) which mediate fast degradation and selective stabilization of many cytokine transcripts are found at the 3' end of the 3.5kb StAR mRNA. We are looking at the post-transcriptional regulation of StAR transcripts and have found that the long but not the short 3'UTR contain destabilizing sequences. At least two elements are found to be involved in the destabilization, one nonspecific tract and AURE, which is specific for steroidogenic cells. TIS11b, a member of the CCCH tandem zinc finger family of RNA binding proteins which destabilize AURE-containing mRNAs, is rapidly induced in steroidogenic cells after cAMP-PKA stimulation and precedes further downregulation of StAR transcripts. We found that TIS11b selectively targets wild-type but not mutant StAR AURE through cotransfection assays. Taken together, we hypothesize that StAR mRNA half-life is kept low by a nonspecific degradation pathway but can be quickly changed through proteins interacting with AURE during stimulation.

Reema Jasuja
Greenspan Lab
Monday, January 24, 2005
12:00 Noon
140 Bardeen

EXTRACELLULAR REGULATION OF BMP SIGNALING BY PRODOMAIN OF BMP-1 AND CHORDIN

Signaling by bone morphogenetic proteins (BMPs) plays central roles in early embryonic patterning, organogenesis and homeostasis in a broad range of species.  Chordin, an extracellular antagonist of BMP signaling, is thought to readily diffuse in tissues, thus forming gradients of BMP inhibition that result in reciprocal gradients of BMP signaling.  The latter determine cell fates along the embryonic dorsoventral axis. The secreted protease BMP-1, originally identified from bone extracts along with other TGF-_ like BMPs is thought to help shape BMP signaling gradients by proteolytically processing chordin and thereby enhancing BMP signaling. BMP-1 is synthesized with an N-terminal prodomain that is removed by furin-like proprotein convertases, presumably activating the protease. Interestingly, all characterized peptide sequences for the form of BMP-1 that co-purify with TGFb-like BMPs in osteogenic fractions are from the prodomain region. To gain more insight into possible functional roles for the BMP-1 prodomain in vertebrates, we have evaluated the proteolytic activity and the binding properties of a furin site-mutated form of ProBMP-1 (ProBMP-1SQQ), that retains its prodomain sequence. We found that ProBMP-1SQQ is efficiently expressed and secreted. We have shown that ProBMP-1SQQ binds to TGFb-like BMPs while the mature BMP-1 does not. This interaction is direct and specific as it cannot be competed away with excess of unrelated growth factors. BMP-2, which is structurally and functionally similar to BMP-4 can compete with BMP-4 for binding to ProBMP-1SQQ . ProBMP-1SQQ can also alter the BMP-4 signaling in cultured cells.
In another project, we show that mammalian Chordin binds heparin with an affinity similar to that of factors known to functionally interact with heparan sulfate proteoglycans (HSPGs) in tissues.  We further demonstrate that Chordin binding in mouse embryonic tissues is dependent upon its interaction with cell surface HSPGs and that Chordin binds to cell surface HSPGs (e.g. syndecans). Also, Chordin-HSPG interactions strongly potentiate the antagonism of BMP signaling by Chordin and are necessary to the retention and uptake of Chordin by cells.
Yukiko Muroi
Jackson Lab
Monday, January 31, 2005
12:00 Noon
140 Bardeen

Fluorescence probing of conformational transitions in the extracellular domain of the GABAA receptor

Rapid synaptic transmission is mediated by ligand gated channels that bind ligand and undergo conformational transitions to open and desensitized states. To investigate the structural nature of these transitions we introduced cysteine residues at selected locations in the GABAA receptor. Wild-type and mutant a1b2 receptors were expressed in Xenopus oocytes, and the introduced cysteines were labeled with the environment-sensitive fluorophores, Alexa Fluor 546 C5 maleimide (Molecular Probes), sulforhodamine methanethiosulfonate (MTSR), and tetramethylrhodamine-maleimide (TMRM). Combined voltage-clamp and fluorescence measurements revealed GABA-induced fluorescence changes occurring simultaneously with GABA-induced current. Fluorescence changes and current both increased with the concentration of GABA. In receptors labeled at a1L127C, receptor activation was accompanied by an increase in fluorescence. This suggests that the side chain of this residue moves from a hydrophilic to a hydrophobic environment when the receptor is activated. In receptors labeled at the homologous site of the b2-subunit (L125C), receptor activation was accompanied by a similar increase. In the a-subunit, this site is near the GABA binding region, but in the b-subunit this site is far away from regions directly engaged in agonist binding. Thus, a global change in receptor structure probably contributes to the fluorescence changes in these labels. Labels at residue a1E122C or b2P120C report a fluorescence decrease in response to GABA. Thus, residues 122 and 127 of the a-subunit, which reside in b strand 5` and 6 in the extracellular domain of the GABAA receptor, undergo opposite changes in environment polarity during the gating of the channel.

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Frontiers in Pharmacology Spring 2005 Schedule


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Siobhan Wilson
Keely Lab
Monday, February 7, 2005
12:00 Noon
140 Bardeen

R-Ras Activity Affects Adherens Junction Formation in Mammary Epithelial Cells

R-Ras is a member of the Ras superfamily of small GTPases, which act as molecular on/off switches for intracellular signaling pathways.  R-Ras shares ~55% identity with classical Ras proteins H-, N-, and K-Ras (1), and has a unique 26-amino acid N-terminal extension (2).  Activation of R-Ras disrupts ductal morphogenesis of mammary epithelial cells (MECs) in 3D collagen gels and enhances cell migration (3,4).  We show here that constitutive activation of R-Ras causes a decrease in adherens junction (AJ) formation and corresponding increase in focal adhesions (FAs).  R-Ras inhibits AJ formation to a greater extent on collagen than on fibronectin, suggesting that R-Ras disrupts AJs by affecting a collagen receptor.  It has been shown previously that R-Ras enhances adhesion through the a2b1 integrin, a collagen and laminin receptor (4).  The a2b1 integrin not only mediates MEC polarization and tubulogenesis in 3D collagen matrices, it also mediates haptotactic migration on collagen (5,6,7).  Because the a2b1 integrin can mediate these two opposing phenotypes, regulation of a2b1 integrin is likely important in epithelial vs. mesenchymal phenotype choice made by MECs in response to the extracellular matrix (ECM).  We find that inhibition of the a2b1 integrin through addition of a blocking antibody, P1E6, causes a partial rescue of AJ formation on collagen but not fibronectin.  In addition, E-cadherin co-immunoprecipitates with the a2b1 integrin in control cells, but not in cells overexpressing activated R-Ras.  These data suggest that R-Ras disrupts adherens junctions in mammary epithelial cells through its effects on the a2b1 integrin, likely through increasing cell-substratum adhesion.

(1) Self, A.J., H.F. Paterson, and A. Hall.  Oncogene, 1993. 8(3):655-61.
(2) Lowe, D.G., et al.  Cell, 1987.  48(1):137-46.
(3) Keely, P.J., et al.  Journal of Cell Biology, 1999.  145(5):1077-88.
(4) Kwong, L., et al.  Molecular and Cellular Biology, 2003.  23(3):933-49.
(5) Berdichevsky, F., et al.  Journal of Cell Science, 1992.  102(Pt 3):437-46.
(6) Chen, J., et al.  American Journal of Pathology, 2002.  161(1):337-44.
(7) Zutter, M.M., et al.  Molecular Biology of the Cell, 2001.  12(S):8-9a.

Shreeya Jayaraman
Kamp Lab
Monday, February 14, 2005
12:00 Noon
140 Bardeen

Isolation and Characterization of Ventricular Myocytes Derived from Human Embryonic Stem Cells using IRX4

Human embryonic stem cells (hESCs) are pluripotent cells derived from the inner cell mass of the blastocyst. These cells have the potential to differentiate into cells from all three embryonic germ layers. We are particularly interested in their differentiation into cardiac myocytes (CMs). CMs can be distinguished in a population of differentiating hESCs as spontaneously contracting areas (beating areas) that can be isolated by microdissection. However, this method has limitations, in that it is practically impossible to isolate cardiac tissue specifically, and also, it is not possible for us to isolate a particular subtype of cardiac cells. The human heart has four chambers (two atria and two ventricles). Atrial and ventricular myocytes are very different in both their morphology and functional characteristics (defined by their action potentials). The Sinoatrial (SA) node present in the right atrium consists of nodal cells that set the pace for cardiac contraction and thus act as the pacemaker for the heart. These nodal cells are very different in their morphology and functional characteristics from both atrial and ventricular myocytes. Previous work from our lab has shown that beating areas in differentiating populations of hESCs show characteristics of atrial, ventricular and nodal cardiac cells. IRX4 is a homeobox protein that labels ventricular progenitor cells in the cardiac crescent in vertebrates. Previous work has shown that Irx4 is expressed in ventricular progenitor cells in the mouse, and its expression in the ventricular myocardium persists into adulthood. We propose to use IRX4 as a marker of ventricular myocytes in a population of differentiating hESCs. We will isolate these cells and characterize them using RT-PCR, immunostaining and functional studies (measurement of action potential).


References:
Regulation of Chamber-Specific Gene Expression in the Developing Heart
by Irx4. Bao et al, Science 1999 Feb;283:1161-4.
Homologous recombination in human embryonic stem cells. Zwaka & Thomson,
Nat Biotechnol. 2003 Mar;21(3):319-21.
Hyun-Jung Kim
Svendsen Lab
Monday, February 21, 2005
12:00 Noon
140 Bardeen

Nurr1 and proneural bHLH proteins produce TH+ neurons in midbrain progenitor cells

 
Hyun-Jung Kim1,3, Mychia Sugimori2, Masato Nakafuku2, Clive N. Svendsen3
 
1Program of Molecular and Cellular Pharmacology, University of Wisconsin-Madison, 2Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229-3039, USA, 3Waisman Center and Department of Anatomy, University of Wisconsin-Madison, WI 53705
 
We have previously shown that neural progenitor/stem cells isolated from different regions of the developing brain and grown as aggregates termed neurospheres (NS) are regionally specified.   Those derived from forebrain regions such as the striatum (NSStr) proliferate faster and generate more neurons than those from midbrain regions such as the ventral mescencephalon (NSVM).  To establish whether factors released NSStr could increase neurogenesis from NSVM, conditioned media exchange experiments were performed.  The results showed that conditioned media from each type of neurosphere had no effect on neurogenesis, excluding the possibility of differential expression of soluble neuronal inducing factors being released by regionally derived stem cells.  To examine the regional specific role of cell-cell contact during expansion and differentiation, NSVM were infected with a viral construct to express GFP and co-cultured with NSStr as hybrid-spheres.  Again, there was no induction of neurogenesis in the NSVM following co-culture suggesting that increased neurogenesis may be the result of intrinsic mechanisms rather than membrane bound or released factors. We next decided to see the role of bHLH proteins and Pax6 which are believed to be involved in cell fate determination.  Primary VM tissue expressed Pax6, Mash1, Ngn1 and Ngn2 but not Ngn3.  In contrast, primary striatal tissue expressed only Pax6, Mash1 and Ngn2.  In vivo expression of these proteins was confirmed by immunohistochemistry in E12, E13, and E14 rats.  Following expansion NSVM lost the expression of all Ngns. To address the functional role of these proteins, VM cells and STR cells were transduced with retrovirus which contains each of ngn1, ngn2, mash1 and pax6. Neurogenesis of NSVM and NSStr was increased by overexpression bHLH proteins such as Mash1, Ngn1 and Ngn2.Nurr1 is a steroid/thyroid hormone receptor and known to activate tyrosine hydroxylase (TH) by direct binding to TH promoter in vitro. Most of TH positive dopaminergic neurons were positive for Nurr1 in vivo. Overexpression of Nurr1 induced TH in concentration dependent manner. However, cells expressing TH by Nurr1 were negative for neuronal marker. Combined forced expression of Nurr1 with bHLH proteins generated TH positive neurons.
 
Ostenfeld,T., Joly,E., Tai,Y.T., Peters,A., Caldwell,M., Jauniaux,E., and Svendsen,C.N. (2002). Regional specification of rodent and human neurospheres. Brain Res.Dev.Brain Res. 134, 43-55.

Nieto,M., Schuurmans,C., Britz,O., and Guillemot,F. (2001). Neural bHLH genes control the neuronal versus glial fate decision in cortical progenitors. Neuron 29, 401-413.
Frontiers in Pharmacology Seminar
Biotechnology Center Auditorium
Tuesday, February 22, 2005
12:00 Noon
425 Henry Mall

Mark A. McNiven, PhD
Professor and Chair
Department of Biochemistry and Molecular Biology
Cell Biology Program Director
Mayo Cancer Center

Seminar Title:  Membrane-Cytoskeletal Dynamics in the Metastatic Process

For additional information, please contact Chateen Carbonara, ccarbonara@wisc.edu, 262-7436.

NOTE TO MOLECULAR AND CELLULAR PHARMACOLOGY GRADUATE STUDENTS:  There will be a student lunch with Dr. McNiven following his seminar in the Pharmacology Conference Room, 3765 MSC.

Mike Gonzales
Anderson Lab
Monday, February 28, 2005
12:00 Noon
140 Bardeen

Nuclear Signaling by the type I Phosphatidylinositol 4-Phosphate Kinase a
Mike Gonzales and Richard A. Anderson.

Phosphatidylinositol 4-Phosphate Kinase a (PIPKIa) is a member of a family of PIP kinases that utilize Phosphatidylinositol 4-phosphate (PI4P) to generate the signaling molecule phosphatidylinositol 4,5-bisphosphate (PIP2).  PIP2 or PIP2 derived 2nd messengers can regulate a host of cellular functions, including endo- & exocytosis, vesicular trafficking, cell motility, adhesion, and cytoskeleton assembly & disassembly. Signaling specificity for each of these events is determined by tightly regulating the spatial production of PIP2 in the cell.  This is achieved by the subcellular targeting of the Kinases that generate PIP2.  We have shown that PIPKIa can be found in the nucleus of cells, more specifically at nuclear speckles, which are storage sites for pre-mRNA splicing molecules.  This suggests a role for PIPKIa and PIP2 production in the regulation of mRNA splicing.  Indeed we have found that knockout of PIPKIa by RNA interference causes a reduction of PIP2 levels in the nucleus affects the phosphorylation state of SR proteins, a family of mRNA splicing factors.  The SR proteins are a family of splicing factors which are required for both constitutive and alternative mRNA splicing.  Their phosphorylation state is directly liked to their ability to promote pre-mRNA splicing in vivo.  Knockout of PIPKIa by RNA interference dramatically reduces the phosphorylation of SR proteins as detected by the mAb104 phosphoepitope.  This data suggests that nuclear PIPKIa or the PIP2 it generates is required for the regulation of SR protein phosphorylation and therefore efficient pre-mRNA splicing.

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There is no Frontiers in Pharmacology Seminar scheduled for Tuesday, March 1, 2005.

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Matt Marengo
Wassarman Lab
Monday, March 7, 2005
12:00 Noon
140 Bardeen

Signaling Through TAF1 Alternative Splicing in Drosophila

We are interested in understanding how the TAF1 subunit of the general transcription factor TFIID contributes to transcriptional activation. TFIID serves three major roles during transcriptional activation. It acts as a transcriptional coactivator by binding transcription factors, it binds promoter sequences, and it post-translationally modifies  histones to modify chromatin structure. Ten years ago, TFIID was largely thought to be a static, unregulated complex. However, recent studies have made it clear that TFIID composition is regulated, and different TFIID complexes regulate the transcription of different genes. TAF1 is an evolutionarily conserved protein that plays a  key role in TFIID function. In Drosophila melanogaster, there is a single TAF1 gene, but the TAF1 mRNA is alternatively spliced to encode four TAF1 protein isoforms. Preliminary data indicate that the isoforms are differentially expressed in Drosophila tissues and in response to cell stress events. We have observed this splicing at the mRNA level by RT-PCR and at the protein level by analysis of a tagged mini-gene. We have made stable cell  lines that overexpress TAF1 isoforms, which we will use to test the hypothesis that inclusion of alternate TAF1 isoforms alters the transcriptional activity of TFIID at specific genes.

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Gennifer Mager
Svaren Lab
Monday, March 7, 2005
12:00 Noon
140 Bardeen

Nab2 represses Transcription by recruiting the Nucleosome Remodeling and Deacetylase Complex
 
The EGR2/Krox-20 transcriptional activator plays a critical role in vertebrate hindbrain development and in peripheral nerve myelination. Our previous studies revealed that EGR2 expression in Schwann cells regulates genes for a number of myelin proteins, as well as genes involved in the lipid/cholesterol synthesis required for myelin formation. Recently, several independent mutations have been associated with human peripheral neuropathies. One such mutation highlights the importance of regulation of EGR2 activity by the NAB1 and NAB2 (NGFI-A/EGR1-binding) corepressors, which are recruited to EGR2 target promoters by direct interaction with EGR2. Using protein interaction assays, we have found that NAB2 interacts with the CHD4 (Chromodomain Helicase DNA-binding protein 4) subunit of the NuRD (Nucleosome Remodeling and Deacetylase) chromatin remodeling complex,  and dominant negative mutants of CHD4 have revealed that NAB2 represses via interaction with the NuRD complex. In addition, we have also characterized the domains required for interaction between NAB2 and CHD4. This unexpectedly revealed that EGR2 activity is modulated by at least two repression domains within NAB2, one of which uniquely requires interaction with CHD4 in order to repress transcription.  Finally, the interaction with CHD4 is regulated by alternative splicing of the NAB2 mRNA. Overall, our studies provide the first evidence implicating a chromatin remodeling complex in the transcriptional regulation of the myelination program in Schwann cells. 

Sujatha Venkataraman
Tibbetts Lab
Monday, March 14, 2005
12:00 Noon
140 Bardeen

Abstract:

The DNA synthesis inhibitor hydroxyurea (HU) is an antineoplastic agent most commonly used in the treatment of chronic myelogenous leukemia. HU induces apoptosis in a cell-type dependent manner; with the cells of hematopoietic origin typically demonstrating heightened sensitivity. The mechanisms through which HU elicits cytotoxicity in leukemia cells are not well characterized. We have employed a human myeloid leukemia cell line (ML-1) as a model system to investigate the mechanisms of HU-induced apoptosis. We demonstrated that ML-1 cells are remarkably sensitive to HU relative to other leukemic cell lines. Features of apoptosis, including membrane blebbing, phopshatidylserine translocation, PARP cleavage, and nuclear condensation appeared approximately 4 h after HU treatment. We found that HU induced p53 in ML-1 cells but not HU-resistant Molt-3 cells, and that p53 accumulation required the ATR protein kinase. Interestingly, HU-induced apoptosis was delayed by the microtubule inhibitor Nocodazole, suggesting that premature mitosis, or another microtubule-dependent event might underlie HU hypersensitivity. Consistent with this notion, ML-1 cells showed apparent defect in the expression of Checkpoint kinase 1(CHK1) protein kinase, which is required for the suppression of mitosis and for replication fork stabilization in response to replication stress. CHK-1-depedent degradation of Cdc25A phosphatase in response to HU was also defective in ML-1 cells indicating that Chk1 function is, in fact, compromised. Although we did not detect obvious signs of premature mitosis in HU-treated ML-1 cells, the results are consistent with a model whereby CHK1 insufficiency contributes to apoptosis through a microtubule-dependent event. ML-1 cells may be a useful model system for delineating the steps of HU-induced apoptosis, and for studying the impact of checkpoint inhibitors on cellular sensitivity to this drug.
Bryan T. Glaser
Burgess Lab
Monday, March 28, 2005
12:00 Noon
140 Bardeen

Studying the Interaction of E. coli Sigma Factors with Core RNA Polymerase using Luminescence Resonance Energy Transfer (LRET)

The Escherichia coli transcription machinery is comprised of core RNA polymerase (a2bb'w) along with one of seven sigma factors.  Core, which is able to bind DNA nonspecifically, is only able to recognize specific promoters once it has bound a sigma factor, forming the holoenzyme.  Each sigma factor is responsible for driving transcription of a different set of genes.  Sigma70, which regulates the "house keeping" genes, is thought to be the most abundant sigma factor while also having one of the highest affinities for core.  If core is truly limited in the cells, the question remains as to how the competition among the seven sigma factors is regulated.  We have constructed a homogeneous assay based on Luminescence Resonance Energy Transfer (LRET) to measure the binding affinity of each sigma factor for RNAP in vitro.  With this information we have started to determine the strength of interaction and exchange rate of each sigma factor with core RNAP and can begin to examine how other proteins, small molecules, or the environment can alter these properties.

References:

Paul, B.J. et al., DksA: A Critical Component of the Transcription Initiation Machinery
 That Potentiates the Regulation of rRNA Promoters by ppGpp and the Initiating
 NTP.  Cell (2004) 118: 311-322.

Perederina, A.  et al.  Regulation through the Secondary Channel- Structural Framework
   for ppGpp-DksA Synergism during Transcription.  Cell (2004) 118: 297-309.

Zhao, K. et al.  The global transcriptional response of Escherichia coli to induced sigma
 protein involves sigma regulon activation followed by inactivation and
degradation of sigma in vivo.  JBC (2005) in press.
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There is no Frontiers in Pharmacology Seminar scheduled for Tuesday, March 29, 2005.


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Delana Hopkins
Greenspan Lab
Monday, March 28, 2005
12:00 Noon
140 Bardeen

Regulation of DSPP Processing by Bone Morphogentic Protein-1

Dentin Sialophosphoprotein (DSPP) is a member of the SIBLING (Small Integrin Binding LIgand N-linked Glycoproteins) family of proteins.  Members of the SIBLING family have a variety of functions including: regulating the biomineralization of bone and dentin and activation of matrix metalloproteinases, and may be upregulated in some cancers.  DSPP is a precursor protein comprised of a N-terminal dentin sialoprotein (DSP) and C-terminal dentin phosphoprotein (DPP) and is processed /in vivo/ to generate these two proteins.  DPP is the major non-collagenous protein in dentin and is involved in the biomineralization of dentin.  The Bone Morphogentic Protein 1/Tolloid (BMP-1/TLD) family of metalloproteinases are involved in the proteolytic processing of a variety of extracellular proteins including procollagen, chordin, alpha 2 macroglobulin, myostatin, lysyl oxidase and small leucine rich proteoglycans such as osteoglycin, biglycan, and decorin.  BMP-1/TLD like proteinases usually cleave just N-terminal to an aspartate residue, although little else is known about any sort of consensus sequence for these proteins.  When isolated from tissue, DPP begins with an Asp-Asp-Pro sequence.  This observation combined with a previous paper from our lab showing that BMP-1/TLD like proteinases cleave dentin matrix protein 1, another SIBLING, led us to investigate these enzymes in the processing of DSPP.   We have shown that BMP-1/TLD like proteinases can process recombinant DSPP to generate fragments consistent in size to those observed /in vivo/.

Scott LeBlanc
Svaren Lab
Monday, April 4, 2005
12:00 Noon
140 Bardeen

Mechanisms of Activity by Dominant-Negative EGR2 Mutants


Abstract:

The EGR2/Krox-20 transcriptional activator serves as a master regulator of peripheral nerve myelination. Previous studies revealed that EGR2 expression in Schwann cells strongly increases the expression of many myelin-related genes, as well as genes involved in lipid/cholesterol biosynthesis. Recently, several dominant EGR2 mutations have been identified in the conserved DNA binding domain, and these correlate with human peripheral neuropathies. The dominant- negative effect of EGR2 mutants is both cell type-specific as well as dependent on promoter context. In order to explore the mechanism of dominant activity by these mutants, we have focused on the regulation of myelin protein zero (MPZ), as it is the most highly expressed myelin gene and is deregulated in the presence of dominant EGR2 mutants. We have shown that a neuropathy-associated EGR2 mutant will inhibit activation of a genomic clone of MPZ by wildtype EGR2. We have also used this assay to define domains within EGR2 which are essential for dominant activity, and our work suggests that the N-terminal activation domain is necessary for this effect. In addition, we have identified an EGR2 responsive segment within the first intron of the MPZ gene that retains sensitivity to dominant mutants, and we have demonstrated an association of EGR2 with this region in vivo using chromatin immunoprecipitation assays. As not all EGR2 target genes are similarly regulated by EGR2 mutants, further characterization of this region will provide an understanding of how the transcriptional template is involved in the dominant-negative activity of the EGR2 mutants.
Ka Young Chung
Walker Lab
Monday, April 4, 2005
12:00 Noon
140 Bardeen

Proteomic Analysis of Endothelin Signaling in Cardiac Myocytes


Endothelin has been known to affect the contractile properties and to stimulate cardiac myocyte growth and myofibrillogenesis.  In previous report, we found that endothelin receptor is colocalized with several signaling molecules such as PLC-b1 and PKCe.  To understand the signaling pathway of endothelin in cardiac myocytes, we identified the component of endothelin receptor complex using immunoprecipitation and mass spectrometry.  We found that endothelin receptor form complex with ion-regulating, lipid-regulating, signaling and cytoskeletal proteins, and with other receptors.  Some of the proteins were also known to be exist at T-tubules.  Furthermore, the composition of the complex changes dynamically in response to activation by ET-1.
Jennifer Lamberski
Burgess Lab
Monday, April 11, 2005
12:00 Noon
140 Bardeen

Studying Estrogen-Related Receptor alpha--Coactivator Interactions in Breast Cancer Cells

Breast cancer is the second leading cause of death among women  in the United States.  Estrogen receptors (ER-alpha, ER-beta) are a primary focus of the etiology and therapy of breast cancers.  ER-alpha-positive breast cancers have a better prognosis and have traditionally  been treated with tamoxifen, a selective estrogen receptor modulator (SERM), or inhibitors of aromatase, an enzyme involved in estrogen synthesis.  ER-alpha-negative breast cancers, which occur in 25% of patients, do not respond to anti-estrogen treatment, are more aggressive, and function through unknown mechanisms (Rochefort et al., 2003).  Estrogen-related receptor alpha (ERR-alpha) is a protein with sequence similarity to ER-alpha, yet it does not bind estrogen.  ERR-alpha can function as either a repressor, down-modulating ER-alpha-regulated transcription, or as a constitutive activator, acting independently of the presence of estrogens and tamoxifen.  Whether ERR-alpha functions as a repressor or as a constitutive activator is likely determined in part by post-translational phosphorylation modifications occurring via the ErbB2/MAPK signaling pathway (Ariazi et al., 2004).  Thus, ERR-alpha probably plays an important role in the etiology and progression of a subset of breast cancers, especially ErbB2-positive cases that are ER-alpha-negative or resistant to tamoxifen.The long-term goal of my project is to find a new treatment for human breast cancer, particularly for aggressive breast cancers that are ER-alpha-negative or tamoxifen resistant, and resistant to currently available therapies. I hypothesize that ERR-alpha is constitutively activated in a subset of breast cancers and is regulating transcription of estrogen-response element (ERE)-containing genes by binding specific coactivators.  Therefore, I believe that the ERR-alpha-coactivator interaction is a promising target for new chemotherapeutic drug development.  The immediate goals are to purify specific coactivators of ERR-alpha by gentle immunoaffinity chromatography, to identify these associated proteins, and to study their binding properties to ERR-alpha in vitro.  By understanding these aspects of ERR-alpha regulation, I will be able to develop a high-throughput screen to identify compounds that interfere with the target interaction between ERR-alpha and the coactivator. This screen could provide a possible new chemotherapeutic candidate for treating aggressive tumors that do not respond to anti-estrogen therapies.
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Rochefort H, Glondu M, Sahla ME, Platet N, Garcia M.  How to target estrogen receptor-negative breast cancer?  Endocr Relat Cancer 10: 261-266, 2003.
Ariazi EA, Kraus RJ, Jordan VC, Mertz JE.  Estrogen-related receptor alpha's transcriptional activities are regulated in part via the EGFR
and ErbB2 (HER2) signaling pathways.  In revision, 2004.

Angela Mabb
Miyamoto Lab
Monday, April 11, 2005
12:00 Noon
140 Bardeen


A SUMO Ligase for NEMO

Nuclear Factor-kappaB (NF-kB) is a transcription factor that regulates a diverse subset of genes such as those involved in immune function, growth control, and regulation of apoptosis.  NF-kB can be activated by a wide variety of stimuli such as tumor necrosis factor alpha (TNFa), interleukin-1 (IL-1), lipopolysacharride (LPS), and DNA damaging agents (ionizing radiation and chemotherapeutic drugs such as camptothecin and etoposide).  Recently, it has been proposed that enhanced NF-kB activity in cancer cells may promote their survival.  As a result, inhibitors for this pathway are being investigated for their ability to enhance cancer cell death.  The orchestration of events responsible for activation of NF-kB in response to DNA damaging agents requires sequential posttranslational modifications of a regulatory subunit essential for NF-kB activation, known as NEMO.  We are interested in the first known posttranslational modification of NEMO in this pathway, SUMOylation.  The process of SUMOylation requires the use of two enzymes, an E1 (Aos1-Uba2) and E2 (Ubc9).  However, whether there is a SUMO ligase (E3) for NEMO is unknown.  Using an siRNA screen for all known SUMO E3's, we have identified a SUMO E3 that plays a critical role in NF-kB activation in response to DNA damaging agents.  Furthermore, overexpression of this E3 is able to enhance NF-kB activity in a DNA damage specific manner and has the ability to promote SUMOylation of NEMO both in vitro and in vivo.  We found that endogenous NEMO interacted with this SUMO E3 in a DNA damage inducible manner.  Analysis using NEMO truncation mutants revealed that this SUMO E3 binds NEMO in its CC1 domain region thus suggesting that this SUMO E3 is the putative E3 for NEMO.  As a result, we propose that inhibition of the SUMO E3 for NEMO may enhance the proapoptotic effects of certain chemotherapeutic agents by preventing NF-kB activation.

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There is  no Frontiers in Pharmacology Seminar scheduled for Tuesday, April 12, 2005.
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Cynthia Koziol
Bertics Lab
Monday, April 18, 2005
12:00 Noon
140 Bardeen

Asthma is a disease that affects over 20 million Americans today.  To date, there is no cure for the disease, only temporary treatments.  The disease is characterized by variable airflow obstruction, airway hyper-responsiveness, and chronic airway inflammation.  These symptoms are due to cellular responses from both immune cells and the surrounding tissues.  Eosinophils, a type of immune cell associated with the inflammation in allergic disease, are commonly found to be highly activated and present in the lungs of asthmatic patients.  The molecular mechanisms of how the eosinophils migrate/chemotax to the area of inflammation, and the mechanism behind how chemoattractants modulate other processes such as degranulation, are poorly understood. The low molecular weight G protein, Rac, is known to modulate a number of functions in neutrophils, a cell closely related to eosinophils.  The role that Rac plays in eosinophil function is not well understood.  We hypothesize that chemoattractant stimulation functions to activate Rac to promote eosinophil actin reorganization, migration/chemotaxis, and cause degranulation to occur.

Amanda Branam
Greenspan Lab
Monday, April 18, 2005
12:00 Noon
140 Bardeen

Chordin is an extracellular BMP (Bone Morphogenetic Protein) signaling antagonist.  It functions by binding to the BMPs and preventing the BMPs from binding to their receptors and initiating signaling.  BMP-1 differs from the rest of the BMP family in that it does not function as a growth factor but rather as a proteinase.  BMP-1 has been shown to be involved in the proteolytic processing of several extracellular matrix proteins.  One of its substrates is chordin.  Upon BMP-1 cleavage of chordin, the bound BMP is released and free to bind to its receptor and initiate signaling.  Recently, two proteins with homology to chordin, Chordin- Like 1 (CHL1) and Chordin-Like 2 (CHL2), have been discovered.  Both of these proteins have been shown to function similarly to chordin and share similar domain structures.  From this information, we suspect that CHL1 and CHL2 may also be substrates for BMP-1.

Monica Gavala
Bertics Lab
Monday, April 25, 2005
12:00 Noon
140 Bardeen 

P2X7 Nucleotide Receptor Regulation of COX-2 Production in Monocytes/Macrophages

Inflammation is a localized protective reaction of tissues to injury or infection and is mediated by substances released from leukocytes present in the inflammatory microenvironment. Usually accompanying infection or inflammation is the release of a high concentration of extracellular nucleotides, supplying a source of ligands for purinergic receptors that are present on the cell surface of many immune cells. One particular nucleotide receptor that is mainly expressed on leukocytes is the P2X7 receptor (P2X7R). Previous work with P2X7R has linked this receptor to the modulation of macrophage responsiveness to inflammatory stimuli. In a mAb-induced arthritis model, the P2X7R knock out mice were markedly less affected by the disease.

To elucidate the mechanism by which the P2X7R modulates inflammation, the effect of P2X7R activation on induced inflammatory endpoints, such as the production of prostaglandins, in macrophages and monocytes (macrophage precursor cells) is currently under investigation. Cyclooxygenase-2 (COX-2) expression has been implicated as the main route for increased prostaglandin synthesis at the sites of inflammation and data in our lab supports that its expression is up-regulated upon P2X7R stimulation.

Previous studies, along with my preliminary data, suggest that stimulation of mitogen-activated protein kinase (MAPK) cascades, and the control of transcription via cAMP response element binding protein (CREB)-linked pathways, are potentially involved in the nucleotide regulation of inflammation. Therefore, it is hypothesized that signaling cascade can provide a link between P2X7R activation and COX-2 expression.

Subramaniam Ramachandran
Ruoho Lab
Monday, April 25, 2005
12:00 Noon
140 Bardeen

Purification and Characterization of the Sigma receptor

Sigma receptors once considered as a class of opioid receptors are now regarded as unique orphan receptors, which contain binding sites for a range of various compounds including cocaine, antipsychotics such as haloperidol and steroids such as progesterone. The sigma 1 receptor has been cloned from guinea pig liver, rat brain, mouse kidney and human placenta and encodes a protein of 223 amino acids. All cloned sigma receptors share grater than 90% sequence identity. Various functions have been proposed for the sigma 1 receptor such as regulation of intracellular Ca2+ release [1], inhibition of K+ channels [2] and antitumour effects both in vitro and in vivo [3]. Association of the sigma 1 receptor with voltage gated potassium channels and inhibition of channel gating has led to the idea that the sigma 1 receptor is a subunit voltage gated potassium channels [4]. Recently sigma 1 receptor knockout mice have been generated and do not display any overt phenotype [5].

As a first step to characterizing the sigma receptor, we have developed a scheme for the purification of the guinea pig sigma receptor from E. coli. The sigma receptor is expressed in E. coli as a maltose binding protein (MBP) fusion protein. The fusion protein was purified on an amylose column, cleaved with Factor Xa and further purified on a Ni2+ affinity column. The Ni2+ column eluate was purified using an anti-MBP antibody linked to sepharose to remove the uncleaved MBP-sigma fusion protein. Radioligand binding studies using [3H] (+) pentazocine indicated that 40-45% of the fusion protein is in a state competent to bind ligand, assuming a 1:1 stoichiometry ligand to protein molecules. Surprisingly when a haloperidol affinity column was used, all the  receptor bound tightly to the column. This observation suggests that the receptor may exist in an oligomeric state perhaps binding [3H] (+) pentazocine as a homodimer.

References:

1.  Hayashi, T. and T.P. Su, Regulating ankyrin dynamics: Roles of sigma-1 receptors. Proc Natl Acad Sci U S A, 2001. 98(2): p. 491-6.

2.  Wilke, R.A., et al., K+ channel modulation in rodent neurohypophysial nerveterminals by sigma receptors and not by dopamine receptors. J Physiol, 1999. 517 ( Pt 2): p. 391-406.

3.  Spruce, B.A., et al., Small molecule antagonists of the sigma-1 receptor causeselective  release of the death program in tumor and self-reliant cells and inhibit tumor growth in vitro and in vivo. Cancer Res, 2004. 64(14): p. 4875-86.

4.  Aydar, E., et al., The sigma receptor as a ligand-regulated auxiliary potassium channel subunit. Neuron, 2002. 34(3): p. 399-410.5.  Langa, F., et al., Generation and phenotypic analysis of sigma receptor type I (sigma1) knockout mice. Eur J Neurosci, 2003. 18(8): p. 2188-96.

Jill L. Humston
Ervasti Lab
Monday, May 2, 2005
12:00 Noon
140 Bardeen

Dystrophin and BPAG1b : A connection in skeletal muscle disease?     

Duchenne Muscular Dystrophy (DMD) is an X-linked recessive progressive muscle wasting disorder that is caused by mutations resulting in the absence of or non-functional DMD gene product, dystrophin. Dystrophin binds cytoplasmic g-actin through its N-terminal and rod domains. Through the cysteine-rich/C-terminal domain (CR/CT), dystrophin associates with a complex of glycoproteins at the sarcolemmal membrane, known as the dystrophin-glycoprotein complex, or the DGC. Dystrophin association with the DGC is mediated directly through binding to the C-terminus of b-dystroglycan, stabilizing the sarcolemma against force transduction during muscle contraction. Utrophin, a dystrophin-related protein, has similar domain structure and high sequence homology. We are quantitatively characterizing and comparing the binding interaction of recombinant full-length utrophin and dystrophin with b-dystroglycan. Additionally, we used recombinant full-length utrophin as an affinity probe with muscle homogenates from control mice to pull down novel molecular partners, and analyzed proteins of interest with mass spectrometry. One identified protein was BPAG1b (bullous pemphigoid antigen 1b), which is a cytoskeletal linker protein that can crosslink actin, intermediate filaments and microtubules. Dystonia musculorum (dt) is a hereditary neurodegeneration syndrome and is caused by defects in the BPAG1 gene (2;3). BPAG1-deficient mice exhibit an intrinsic muscle weakness and membrane instability (1), phenotypically similar to the mdx mouse, a dystrophin-deficient animal model for DMD. We are further characterizing the muscle phenotype of BPAG1-/- animals for comparison to the phenotypes manifest in mdx mice.

References:

1.   Dalpe, G., Mathieu, M., Comtois, A., Zhu, E., Wasiak, S., De Repetigny, Y., Leclerc, N., and Kothary, R. (1999) Dev.Biol. 210, 367-380

2.   Dowling, J., Yang, Y., Wollmann, R., Reichardt, L. F., and Fuchs, E. (1997) Dev.Biol. 187, 131-142

3.   Guo, L., Degenstein, L., Dowling, J., Yu, Q. C., Wollmann, R., Perman, B., and Fuchs, E. (1995) Cell 81, 233-243

Chateen Carbonara
Anderson Lab
Monday, May 2, 2005
12:00 Noon
140 Bardeen


Type I Phosphatidylinositol-4-Phosphate 5-Kinase Ig Interacts with E-Cadherin to Regulate Cell-Cell Contact Assembly


The Epithelial-Mesenchymal Transition (EMT) is a normal process that occurs during embryonic development and wound healing. EMT is a reversible process that occurs when cells lose their cell-cell contacts, migrate to different subcellular locations, and then reacquire their cell-cell adhesions. When the normal functions of EMT are perturbed or when this process becomes misregulated, this can lead to cells migrating and integrating in distant organs. While many signaling pathways have been implicated in EMT, it is not fully clear as to how this process is initiated and perpetuated. Members of the cadherin family play an important role in the formation of cell-cell adhesions and thus mediate events such as wound healing, cell migration, and the establishment of tissue architecture. The expression of different cadherin isoforms during various stages of development promotes proper cell differentiation and provides cues for the maintenance of tissue and organ integrity. One specific cadherin isoform, E-cadherin (epithelia-cadherin), plays a key role in cellular organization during embryogenesis and organogenesis, as well as in morphogenesis and wound healing in mature organisms. Modulation ofE-cadherin cell-cell adhesions occurs through signaling via the PI 3-kinase, Rac, FAK, Src, and Ras pathways. Evidence from our lab also suggests that E-cadherin assembly is regulated by generation of the second messenger phosphatidylinositol-4,5-bisphosphate (PI4,5P2).

PI4,5P2 is synthesized by Type I phosphatidylinositol phosphate kinases (PIPKIs) in a spatially and temporally regulated manner in cells. We have discovered an interaction between one specific isoform, PIPKIg, and E-cadherin in vitro and in vivo at cell-cell contacts in normal epithelial cells. Upon knockdown of PIPKIg in these cell lines, we observe a change in phenotype from a polarized epithelial phenotype to a scattered and motile fibroblastic cell that resembles a cell undergoing EMT. We propose that PIPKIg expression and association with E-cadherin modulates the assembly of E-cadherin into cell-cell adhesions. Expression of a cytoplasmic E-cadherin tail in epithelial cells perturbs endogenous E-cadherin function and targeting. This approach will be utilized to delineate the role of PIPKIg in mediating cell-cell contacts. How PIPKIg modulates E-cadherin assembly, targeting, or turnover in cells will be investigated using biochemical and cell biological approaches.
Emily Vaughan
Keely Lab
Monday, May 16, 2005
12:00 Noon
140 Bardeen

Determining how extracellular matrix rigidity regulates proliferation in mammary epithelial cells


In vivo, the properties of the extracellular matrix (ECM) surrounding mammary epithelial cells can regulate proliferation and differentiation.  By growing mammary epithelial cells in a 3D collagen matrix, we can manipulate the rigidity and density of the ECM in order to study how these processes are regulated.  Cells are grown in rigid or attached gels, where the collagen gel is left attached to the dish, and floating gels, where the gel is detached and floated in culture media.  Cells grown in attached gels have a more proliferative phenotype, while those grown in floating gels are able to contract the gel and differentiate into structures similar to those found in vivo.  Our lab has previously shown that in T47D cells, activity of the small GTPase Rho and Focal Adhesion Kinase (FAK) are important in regulating the response to rigidity.  Using MCF10A cells, we are now determining how proliferation is regulated using this system.  Specifically, we are interested in the timing of cell cycle regulation and cyclin expression.  It is known that cyclins expressed during the G1 phase of the cell cycle (cyclins D1 and E) are regulated by adhesion, and we hypothesize that these cyclins may also be regulated by rigidity.  Knowledge of how ECM rigidity regulates proliferation is important in the breast cancer research field, as dense breast tissue is the leading risk factor for breast cancer.
Dominique Fontanilla
Ruoho Lab
Monday, May 16, 2005
12:00 p.m.
140 Bardeen

Mapping the Sigma1 Receptor Binding Site


The sigma receptor represents a ubiquitously expressed unique binding site in the CNS and is a member of the orphan receptor class for which no endogenous ligand is known. It is known, however, that the sigma receptor binds with high affinity to several classes of chemically unrelated ligands such as neurosteroids, neuroleptics, dextrobenzomorphans,and cocaine. Consequently, it is thought that the sigma receptor may mediate the immunosuppressant, antipsychotic, and neuroprotective effects of drugs. Functionally, sigma 1 receptor ligands have been shown to modulate voltage-gated K+ channels independently of G-proteins or kinases (1). They have also been shown to mediate calcium release from intracellular stores (2), regulate compartmentalization of lipids on ER (3), and have antitumour activity in vitro and in vivo (4).

The sigma1 receptor has been shown to have three hydrophobic regions, two of which, have highly conserved residues between the sigma receptor and the yeast C8-C7 sterol isomerase (ERG2) (5). These regions have thus been termed steroid binding domains 1 and 2 (SBD1 and SBD2). Previous photoaffinity labeling work in our lab has implicated Asp 188 in SBD2 as a ligand-binding target using a 3-iodo-4-azidococaine photoprobe. Currently, we aim to probe the SBD1 region by synthesizing photoprobes that have their photoreactive group on moieties that we hypothesize are interacting with this domain. Therefore, N-alkyl-N'-aralkyl derivatives which mimic the pharmacophore found in many sigma1 ligands have been synthesized as well as an N-substituted cocaine derivative.  The binding affinities of these compounds have been characterized by competitive displacement against [3H] (+) pentazocine, which is selective for sigma1. Preliminary data for one N-alkyl-N'-aralkyl derivative as a radioactive photoaffinity label shows sigma1-specific binding that can be protected by haloperidol, a neuroleptic with high affinity for sigma1 receptors.

References:


1) Wilke, R.A. et al. (1999). J. PHysiol. 517, 391-406.
2) Hayashi, T. and Su. T.P. (2001). PNAS. USA. 98, 491-496.
3) Hayashi, T. and Su, T.P.(2003). JPET. 306, 718-725.
4) Berthois, Y. et al. (2003). B.J. Cancer. 88, 438-446.
5) Jbilo, O. et al. (1997) JBC. 272(43):27107-15.
Nicholas Schill
R. A. Anderson Lab
Monday, 23 May 2005
12:00 PM
140 Bardeen

Identification of Novel Phosphatidylinositol 4-phosphate 5-kinase Splice Variants

The spatial and temporal metabolism of phosphoinositides is important in the modulation of many cell signaling functions. Phosphatidylinositol 4, 5-bisphosphate (PIP2) is a lipid signaling molecule which has been shown to play a role in the regulation of endocytosis, actin assembly, cell migration, and the maintenance of cellular adhesion structures. Phosphatidylinositol 4-phosphate 5-kinase type I gamma (PIPKIg), splice variant 661, has been shown to synthesize PIP2 at, and localize to, focal adhesions via its interaction with the adhesion molecule talin. Recently, PIPKIg was shown to also interact with E-cadherin and localize to adherens junctions in polarized epithelial cells. However, the splice variant of PIPKIg interacting with E-cadherin remains to be identified. I employed 3' rapid amplification of cDNA ends (RACE) to identify two previously unknown C-terminal splice variants of PIPKIg from MCF10A cells. The variants, termed PIPKIg700 and PIPKIg707, were found to be encoded by a portion of the human PIPKIg  gene previously thought to be intronic sequence. Corresponding sequence for the PIPKIg707 variant was also identified in the mouse, dog and rat genomes. The discovery of these two splice variants supports our hypothesis that variation of the C-terminal end of PIPKIg may be a way for the cell to provide controlled, localized PIP2 production for different cellular functions.
David L. Mellman
Richard A. Anderson Labo
Monday, May 23, 2005
12:00 Noon
140 Bardeen

IaIP9: A new poly(A) polymerase which interacts with PIPKIa and localizes at nuclear speckles


PIPKIa is one of three type I PIP Kinases which generates PI4,5P2 utilizing PI(4)P as a substrate. PI4,5P2 is a known second messenger molecule which regulates numerous signaling events within the cell. It has been reported that PIPKIa localizes at nuclear speckles and it has also been reported that PI4,5P2 is at nuclear speckles. Although, nothing has been reported about how nuclear generated PI4,5P2 regulates nuclear signaling events, such as the processing of pre-mRNA.

We have characterized the targeting of PIPKIa to nuclear speckles and have found that the C-terminus of PIPKIa is the portion of the molecule which targets it to nuclear speckles. In order to discover proteins which interact with the C-terminus of PIPKIa and may target to speckles as well, we performed a yeast two-hybrid screen using the C-terminus of PIPKIa as the bait. From this screen, we isolated a molecule which appears to be a new poly(A) polymerase. This new poly(A) polymerase is for now called IaIP9: Ia because PIPKIa was used as a bait in the yeast two-hybrid screen, and IP9 for Interacting Protein 9, hence IaIP9.

We have begun a thorough examination of IaIP9. We have found that endogenous IaIP9 localizes at nuclear speckles and importantly, we have found that IaIP9 has poly(A) polymerase activity in vitro. Based upon the primary sequence alignment of the poly(A) polymerase module of IaIP9 versus the polymerase module of known poly(A) polymerases, the poly(A) polymerase module of IaIP9 shows a large degree of divergence. For example, the polymerase module of IaIP9 is a split domain linked by a proline rich region, a sequence characteristic not seen in any known poly(A) polymerase. Although, the critical residues within the nucleotidyl transferase motif, the portion of the poly(A) polymerase module necessary for transferring AMP from ATP to the 3'-end of the mRNA are conserved. Moreover, we have found that endogenous IaIP9 can be Co-Immunoprecipitated with endogenous symplekin, a known protein component of the nuclear polyadenylation complex. Taken together, these data imply that IaIP9 is part of a nuclear polyadenylation complex inside the cell where it can localize at nuclear speckles and act in the capacity as a poly(A) polymerase. 
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