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Trainer in the Following
Programs:
- Molecular and Cellular Pharmacology
Program
- Celular and Molecular Biology
- Genetics
- Molecular Biosciences
- Neuroscience
- Pharmaceutical Sciences
Honors and Awards:
- Howard Hughes Medical Institute
Postdoctoral Fellow
Molecular basis
of sensory transduction:
The goal of my research is
to understand the mechanisms by which invertebrate nervous systems process
sensory information. In the nematode Caenorhabditis elegans, the simple
nervous system, powerful genetics, and fully sequenced genome enables
study of signal transduction pathways at the behavioral, cellular, genetic,
molecular, and biochemical levels. The "worm" has proven extremely
useful for defining pathways of gene action and identification of new
proteins involved in a particular pathway. We are using C. elegans as
a model system for studying chemosensation, mechanosensation, synaptic
transmission, intraflagellar transport (IFT), and two human genetic disorders:
autosomal dominant and recessive polycystic kidney diseases (ADPKD and
ARPKD).
ADPKD: Defects in a sensory
channel complex?
ADPKD strikes 1 in 1000 individuals,
often resulting in end-stage renal failure. Mutations in either PKD1 or
PKD2 account for 95% of all cases. Recently, polycystin-1 and polycystin-2
(encoded by PKD1 and PKD2, respectively) have been demonstrated to assemble
to form a cation channel in vitro. We have identified and characterized
the worm counterparts of PKD1 and PKD2, lov-1 and pkd-2, respectively.
Surprisingly, these genes are necessary for C. elegans males to sense
their mates during sex; we think that the roles of the proteins within
a cell are conserved, but that the overall affect on the organism (worm
behavior vs. human kidney development/function) is likely very different.
We have found that LOV-1 and PKD-2 act non-redundantly in the same pathway,
localize to the ciliated sensory endings of male-specific chemosensory
neurons, and are not required for ciliogenesis. We will continue to use
C. elegans to study the function(s) of PKD1 and PKD2 and to identify new
genes that act in the ADPKD pathway.
Molecular mechanisms of
sensation
To begin to unravel the molecular
basis of sensory behaviors such as touch, taste, and smell, we will take
advantage of the C. elegans completely sequenced genome using a functional
genomics approach. The C. elegans male nervous system possesses multiple
sensory neurons that are required for male mating behavior. To investigate
the role of mechanosensation in mating, we are characterizing the touch
receptor molecules, the DEG/ENaC (degenerin and epithelial sodium channel)
ion channel gene family. Similarly, we are also determining the expression
patterns and functions of male-enriched neuronal genes that encode signal
transduction molecules such as G-protein coupled receptors, channels,
transporters, neurotransmitters, and neuropeptides. Our studies may shed
light on the basic molecular mechanisms an animal uses to sense, process,
and respond to environmental stimuli.
Figure
Legend: Polycystin 1 (PC1) and polycystin
2 (PC2) family members all share a similar predicted transmembrane
(tm) spanning domain architecture. PC1 and LOV-1 possess (i) a large
extracellular domain that does not share sequence similiarity, (ii)
a GPS (G-protein coupled receptor sequence) cleavage site, (iii) eleven
tm domains, (iv) an intracellular PLAT domain between tm1 and tm2
(blue box), and (v) tm domains (red) that are homologous to PC2. PC2
and PKD-2 share features characteristic of a cation channel, namely,
(i) 6 tm domains, (ii) a pore region between tm5 and tm6 and (iii)
homology to TRP channels. PC2 members all possess a coiled-coil domain
that may mediate protein-protein interactions. |
Selected Recent Publications:
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=search&term=barr%2Bmm
- Bae YK, Qin H, Knobel KM,
Hu J, Rosenbaum JL, and Barr MM. (2006). General and cell-type specific mechanisms
target TRPP2/PKD-2 to cilia. Development. 133:3859-3870. PDF PMID 16943275
- Hu J, Bae YK, Knobel KM,
and Barr MM. (2006). Casein kinase II and calcineurin modulate TRPP function
and ciliary localization. Mol Biol Cell. 17:2200-2211. PDF PMID 16481400
- Qin H, Burnette DT, Bae
YK, Forscher P, Barr MM, and Rosenbaum JL. (2005). Intraflagellar transport
is required for the vectorial movement of TRPV channels in the ciliary
membrane. Curr Biol. 15:1695-1699. PDF PMID 16169494
- Jauregui AR and Barr MM.
(2005). Functional characterization of the C. elegans nephro-cystins
NPHP-1 and NPHP-4 and their role in cilia and male sensory behaviors.
Exp Cell Res. 305:333-342. PDF PMID 15817158
- Peden EM and Barr MM. (2005).
The KLP-6 kinesin is required for male mating behaviors and polycystin
localization in Caenorhabditis elegans. Curr Biol. 15:394-404. PDF PMID 15753033
- Barr MM. (2005). Caenorhabditis
elegans as a model to study renal development and disease: sexy cilia. J Am Soc Nephrol. 16:305-312. PDF PMID 15647338
- Hu J and Barr MM. (2005).
ATP-2 interacts with the PLAT domain of LOV-1 and is involved in Caenorhabditis
elegans polycystin signaling. Mol Biol Cell. 16:458-469. PDF PMID 15563610
- Wang J and Barr MM.
(2005). RNA interference in C. elegans. Methods in Enzymology. 392:36-55. PMID 15644174
- Barr MM. (2004). C. elegans
as a Model of Renal Development and Disease. JASN. 16:305-312. Review.
- Barr MM.
(2003). Super Models. Physiol Genomics. 13:15-24. PDF PMID 12644630
- Qin H, Rosenbaum JL, and Barr
MM. (2001). An autosomal recessive polycystic kidney disease gene homolog
is involved in intraflagellar transport in C. elegans ciliated sensory
neurons. Curr Biol. 11:457-61. PDF PMID 11301258
- Barr MM, DeModena J,
Braun D, Nguyen CQ, Hall DH, and Sternberg PW. (2001). The
Caenorhabditis elegans autosomal dominant polycystic kidney disease
gene homologs lov-1 and pkd-2 act in the same pathway. Curr Biol.
11:1341-1346. PDF PMID 11553327
- Barr MM and Sternberg PW.
(1999). A polycystic kidney-disease gene homologue required for male
mating behaviour in C. elegans. Nature. 401:386-9. PDF PMID 10517638
Invited review:
- Barr, M.M. Super models.
Physiol. Genomics (2003) 13:15-24.
Book chapters in press:
- Barr, M.M. and Wang, J.
RNAi in C. elegans in RNA interference nuts and bolts (2003).
Editor: David R. Engelke. Publisher: DNA Press.
- Barr, M.M. and Hu. J. Molecular
basis of behaviour in Nematode Behaviour (2003). Editor: Randy Gaughler.
Publisher: CABI press.
Scientists in the Barr
Lab:
Postdoctoral Fellows:
- Dr. Karla M. Knobel
- Dr. Jinghua Hu
- Dr. Juan Wang
Graduate Students:
- Young-Kyung Bae (Genetics)
- Tiewen Liu (Genetics)
- Andrew Jauregui (Genetics)
Research Specialist:
Undergraduates:
- Julie A. Karl
- Dave Saber
- Sam Wittekind
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